AliasesHuman-transcriptome DataBase for Alternative Splicing
DescriptionH-DBAS is a database of humanalternative splicing (AS) based on H-InvDB. H-DBAS offers variousannotated informarion of genome-wide human AS variants. The fullness ofAS variants were ensured and the representative AS variants (RASVs) were then selected. H-DBAS includes an interactive viewer constructed byFlash. In the viewer, RASVs affecting protein functions, theconservation of RASVs between human and mouse, rat, chimpanzee, macaqueand dog by comparative genomics and so on can be displayed.
Main Institutes of managementMolecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)
Country of the InstituteJapan
URL of the site
Input exampleClick links located at the right side of "Search item samples for Simple search at upper right (direct links)".
Keywordalternative splicing | comparative genomics | RNA-Seq
Amount of the all data for download(Mbyte) | Method to obtain the all data.3000|
External resources (databases) in building the product.H-InvDB | DDBJ | Refseq | Ensembl | UCSC | FANTOM3 | MGC | dbSNP
Data typeHuman and mouse full-length cDNA | Human and mouse mRNA | Rat, chimpanzee, macaque and dog RNA
Biological species in the main concernHomo sapiens | Mus musculus | Rattus norvegicus | Canis lupus familiaris [Taxonomy_id: 9615, dog] | Homo sapiens [Taxonomy_id: 9606, human] | Macaca mulatta [Taxonomy_id: 9544, Rhesus monkey] | Mus musculus [Taxonomy_id: 10090, house mouse] | Pan troglodytes [Taxonomy_id: 9598, chimpanzee] | Rattus norvegicus [Taxonomy_id: 10116, Norway rat]
Conditions of useAttribution&Share AlikeUser account is not required.
Frequency of updates (in last two years)4 or more times / year
Last date of updates (date of confirmation)2011/12/26 (2019/07/03)
Main IDs used in the productsH-Inv transcript ID (HIT) | H-Inv cluster ID (HIX) | Accession Number | HUGO gene symbol | GeneID | OMIM ID | EC number
How to make a link to get access to each IDs. human_mrna)&hix=[HIX]
external databases to which this database/tool have linksNone
Published papers (PubMed IDs)pmid:19969536 | pmid:17130147
Operational Statusavailable