＜Previous
Next＞
H-DBAS
| Name | H-DBAS |
|---|---|
| Aliases | Human-transcriptome DataBase for Alternative Splicing |
| Description | H-DBAS is a database of humanalternative splicing (AS) based on H-InvDB. H-DBAS offers variousannotated informarion of genome-wide human AS variants. The fullness ofAS variants were ensured and the representative AS variants (RASVs) were then selected. H-DBAS includes an interactive viewer constructed byFlash. In the viewer, RASVs affecting protein functions, theconservation of RASVs between human and mouse, rat, chimpanzee, macaqueand dog by comparative genomics and so on can be displayed. |
| Type | DB |
| Main Institutes of management | Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST) |
| Country of the Institute | Japan |
| URL of the site | http://www.h-invitational.jp/h-dbas/?lang=en |
| Interface | GUI |
| Input example | Click links located at the right side of "Search item samples for Simple search at upper right (direct links)". |
| Keyword | alternative splicing | comparative genomics | RNA-Seq |
| Amount of the all data for download（Mbyte） | Method to obtain the all data. | 3000|http://h-invitational.jp/h-dbas/download.jsp |
| External resources (databases) in building the product. | H-InvDB | DDBJ | Refseq | Ensembl | UCSC | FANTOM3 | MGC | dbSNP |
| Data type | Human and mouse full-length cDNA | Human and mouse mRNA | Rat, chimpanzee, macaque and dog RNA |
| Biological species in the main concern | Homo sapiens | Mus musculus | Rattus norvegicus | Canis lupus familiaris [Taxonomy_id: 9615, dog] | Homo sapiens [Taxonomy_id: 9606, human] | Macaca mulatta [Taxonomy_id: 9544, Rhesus monkey] | Mus musculus [Taxonomy_id: 10090, house mouse] | Pan troglodytes [Taxonomy_id: 9598, chimpanzee] | Rattus norvegicus [Taxonomy_id: 10116, Norway rat] |
| Conditions of use | Attribution&Share AlikeUser account is not required. |
| Frequency of updates (in last two years) | 4 or more times / year |
| Last date of updates (date of confirmation) | 2011/12/26 (2019/07/03) |
| Main IDs used in the products | H-Inv transcript ID (HIT) | H-Inv cluster ID (HIX) | Accession Number | HUGO gene symbol | GeneID | OMIM ID | EC number |
| How to make a link to get access to each IDs. | http://www.h-invitational.jp/h-dbas/locusOverview.do?dbname=human_flcdna(or human_mrna)&hix=[HIX] |
| external databases to which this database/tool have links | None |
| Published papers (PubMed IDs) | pmid:19969536 | pmid:17130147 |
| Operational Status | available |
＜Previous
Next＞