Idiographica
| Summary | Idiographica is a web server for you to create your own idiogram. Please fill the following web form and click on the submit button. The Idiographica server will send you an email to notify the completion of the idiogram creation task. You can use the generated idiograms without any restriction or obligation.(cited from the original site) |
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| Data type | Chromosome |
IPknot
| Summary | RNA pseudoknot prediction based on maximizing expected accuracy (cited from the original site). |
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| Data type | RNA pseudoknot |
LAMPLINK
| Summary | The LAMPLINK can detect statistically significant epistatic interactions of two or more SNPs from GWAS data. This software can be used in the same way as the widely used GWAS analysis software PLINK, but LAMPLINK has the additional options for the detection of epistatic interactions with LAMP, which is a multiple testing procedure for combinatorial effects discovery. |
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| Data type | DNA-sequnece |
LAST
| Summary | LAST is a software for comparing and aligning sequences, typically DNA or protein sequences. LAST is similar to BLAST, but it copes better with very large amounts of sequence data. It can also report probabilities for every pair of aligned letters, indicating the reliability of each pairing. |
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| Data type | DNA-sequence ,RNA, protein, user-defined alphabet. |
MAFFT
| Summary | MAFFT is a multiple sequence alignment program for unix-like operating systems. It offers a range of multiple alignment methods, L-INS-i (accurate; for alignment of |
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| Data type | DNA-sequence alignment |
miRRim
| Summary | miRRim is a method for detecting miRNA foldbacks based on hidden Markov model (HMM). In this method, the evolutionary and secondary structural features of a miRNA region is represented by a sequence of multidimensional vectors. HMMs that generate a sequence of continuous values are used to model the feature vector sequences.(cited from the original site) |
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| Data type | RNA (miRNA) |
Murlet
| Summary | Murlet is a multiple alignment tool for RNA sequences using iterative alignment based on Sankoff's algorithm with sharply reduced computational time and memory. This was developed by Computational Biology Research Center (CBRC), AIST. |
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| Data type | RNA |
MXSCARNA
| Summary | MXSCARNA (Multiplex Stem Candidate Aligner for RNAs) is a multiple alignment tool for RNA sequences using progressive alignment based on pairwise structural alignment algorithm of SCARNA. |
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| Data type | RNA (RNA sequence) |
paraclu
| Summary | Paraclu finds clusters in data attached to sequences(cited from original site). |
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| Data type | DNA-sequence |
PHMMTS
| Summary | PHMMTS (Pair Hidden Markov Models on Tree Structures) aligns a sequence of unknown secondary structure to a sequence of known secondary structure (cited from the original site). |
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| Data type | RNA |