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A Method for Extracting Optimal Sequence Related to Biological Activity

Data type
DNA-motif
Main Institutes of management
NARA INSTITUTE of SCIENCE and TECHNOLOGY (NAIST)
Biological species in the main concern
All species
Commentary page →

ADMER2

Data type
Chemical compound *AMEDAS data of intended year (used to create weather data) *Discharge data of intended chemical substance (used to create grid discharge data)
Main Institutes of management
"Research Institute of Science for Safety and Sustainability (RISS), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

ADMER3

Data type
Emission of PRTR(Pollutant Release and Transfer Register) | chemical substances
Main Institutes of management
"Research Institute of Science for Safety and Sustainability (RISS), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

AIST-ICET

Data type
chemicals substances
Main Institutes of management
"Research Institute of Science for Safety and Sustainability (RISS), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
-
Commentary page →

AIST-MeRAM

Data type
chemicals substances
Main Institutes of management
"Research Institute of Science for Safety and Sustainability (RISS), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

AIST-SHANEL

Data type
-
Main Institutes of management
"Research Institute of Science for Safety and Sustainability (RISS), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
-
Commentary page →

AIST‐CBAM

Data type
chemicals substances
Main Institutes of management
"Research Institute of Science for Safety and Sustainability (RISS), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
fish
Commentary page →

ALN

Data type
"DNA, amino acid sequences"
Main Institutes of management
"Graduate School of Informatics, Kyoto University"
Biological species in the main concern
All species
Commentary page →

ALNGG

Data type
"DNA-sequence , Genome"
Main Institutes of management
"Graduate School of Informatics, Kyoto University"
Biological species in the main concern
Vertebrate
Commentary page →

ASIAN

Data type
Gene expression profile
Main Institutes of management
"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

BioDBScan

Data type
"genes, pathways, diseases, etc."
Main Institutes of management
"Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
"Homo sapiens, Mus musculus, Rattus norvegicus, Ciona intestinalis"
Commentary page →

Blast wind overpressure and impulse calculation

Data type
"Dosage, Distance"
Main Institutes of management
"Research Institute of Science for Safety and Sustainability (RISS), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
None
Commentary page →

CADLIVE

Data type
Metabolite repression
Main Institutes of management
Kyushu Insistute of Technology
Biological species in the main concern
All species
Commentary page →

CARCINOscreen

Data type
Chemical compound
Main Institutes of management
"Chemicals Evaluation and Research Institute, Japan (CERI)"
Biological species in the main concern
Rat
Commentary page →

COSMOS

Data type
DNA-sequnece
Main Institutes of management
"Biotechnology Research Institute for Drug Discovery, National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

CentroidAlifold

Data type
RNA secondary structure
Main Institutes of management
"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

CentroidAlign

Data type
RNA alignment
Main Institutes of management
"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

CentroidFold

Data type
RNA
Main Institutes of management
"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

CentroidHomfold

Data type
secondary structure
Main Institutes of management
"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

ChIP2LAMP

Data type
"ChIP-sequence, RNA-sequence"
Main Institutes of management
"Biotechnology Research Institute for Drug Discovery, National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

CoCoozo

Data type
Ptotein-sequence
Main Institutes of management
"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

DAFS

Data type
RNA
Main Institutes of management
"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

DPClus

Data type
Protein-function
Main Institutes of management
NARA INSTITUTE of SCIENCE and TECHNOLOGY (NAIST)
Biological species in the main concern
All species
Commentary page →

Data mining analysis of supersecondary structure

Data type
Protein structure
Main Institutes of management
"Environmental Management Research Institute (EMRI), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
None
Commentary page →

Dnemulator

Data type
DNA-sequence
Main Institutes of management
"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

Dr DMASS

Data type
mass spectral data
Main Institutes of management
NARA INSTITUTE of SCIENCE and TECHNOLOGY (NAIST)
Biological species in the main concern
All species
Commentary page →

Dr DMASS+

Data type
mass spectral data
Main Institutes of management
NARA INSTITUTE of SCIENCE and TECHNOLOGY (NAIST)
Biological species in the main concern
All species
Commentary page →

FORTE

Data type
Protein-structure
Main Institutes of management
"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

Fdur

Data type
RNA
Main Institutes of management
"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

FragmentAlign

Data type
"Metabolite repression , mass spectra"
Main Institutes of management
Kazusa DNA Research Institute (KDRI)
Biological species in the main concern
All species
Commentary page →

GPCRs Interaction Partners

Data type
Interaction GPCR
Main Institutes of management
"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

GRIFFIN

Data type
"Ptotein-sequence , amino acid sequence"
Main Institutes of management
"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

GRisk

Data type
Disease risk
Main Institutes of management
"Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

GUPPY

Data type
DNA-sequence
Main Institutes of management
"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

GeneDecoder

Data type
"DNA-sequence , Eukaryote gene"
Main Institutes of management
"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
Eukaryote
Commentary page →

HEAT

Data type
Annotation
Main Institutes of management
"Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
Human
Commentary page →

HapRisk

Data type
Expression risk
Main Institutes of management
"Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

HomeoRoq

Data type
protein - amino-acid sequence
Main Institutes of management
"Biotechnology Research Institute for Drug Discovery, National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

Hyperlink Management System

Data type
Data identifiers (IDs)
Main Institutes of management
"Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
HumanMus musculus | Rattus norvegicus | Cinoa intestinails
Commentary page →

ID Converter System

Data type
Data identifiers (IDs)
Main Institutes of management
"Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
Human
Commentary page →

ID Resolver

Data type
ID identifiers
Main Institutes of management
"Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
"Human, mouse and chemical compounds data "
Commentary page →

IPknot

Data type
RNA pseudoknot
Main Institutes of management
"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

Idiographica

Data type
Chromosome
Main Institutes of management
"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
"Human, Mouse, Rat, Fruit fly"
Commentary page →

KAGIANA

Data type
Gene expression
Main Institutes of management
Kazusa DNA Research Institute (KDRI)
Biological species in the main concern
Arabidopsis
Commentary page →

KaPPA-View

Data type
Metabolite repression Gene expression
Main Institutes of management
Kazusa DNA Research Institute (KDRI)
Biological species in the main concern
"Arabidopsis,Rice ,Tomato ,Lotus japonicus"
Commentary page →

KaPPA-View4 KEGG

Data type
Metabolite repression Pathway
Main Institutes of management
Kazusa DNA Research Institute (KDRI)
Biological species in the main concern
All species
Commentary page →

LAMP

Data type
p-values of multiple testing correltions
Main Institutes of management
"Biotechnology Research Institute for Drug Discovery, National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

LAMPLINK

Data type
DNA-sequnece
Main Institutes of management
"Biotechnology Research Institute for Drug Discovery, National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

LAST

Data type
"DNA-sequence ,RNA, protein, user-defined alphabet."
Main Institutes of management
"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

MAFFT

Data type
DNA-sequence alignment
Main Institutes of management
"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

MDV

Data type
DNA-motif
Main Institutes of management
"Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
"Human, mouse promoters are available on the site."
Commentary page →

MXSCARNA

Data type
RNA (RNA sequence)
Main Institutes of management
"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

MitoFates

Data type
protein - amino-acid sequence
Main Institutes of management
"Biotechnology Research Institute for Drug Discovery, National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
"fungi, plant, metazoa"
Commentary page →

Murlet

Data type
RNA
Main Institutes of management
"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

NGSFeatGen

Data type
DNA-sequence NGS
Main Institutes of management
"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

PAPIA

Data type
Protein-structure
Main Institutes of management
"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

PHMMTS

Data type
RNA
Main Institutes of management
"Keio University | Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

PMID-Extractor

Data type
Journal
Main Institutes of management
"Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
None
Commentary page →

POODLE

Data type
Protein-AminoAcid
Main Institutes of management
"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

PRRN

Data type
"DNA, amino acid sequences"
Main Institutes of management
"Graduate School of Informatics, Kyoto University"
Biological species in the main concern
All species
Commentary page →

PSTAG

Data type
RNA
Main Institutes of management
"Keio University | Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

PowerFT

Data type
mass spectrome data
Main Institutes of management
Kazusa DNA Research Institute (KDRI)
Biological species in the main concern
All species
Commentary page →

Prediction program

Data type
DNA-sequence
Main Institutes of management
Hiroshima University
Biological species in the main concern
Yeast
Commentary page →

PubMedScan

Data type
Articles registered in PubMed
Main Institutes of management
"Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
None
Commentary page →

RNAmine

Data type
RNA
Main Institutes of management
"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST) | Mizuho Information and Research Institute, Inc."
Biological species in the main concern
All species
Commentary page →

Raccess

Data type
RNA
Main Institutes of management
"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

RactIP

Data type
RNA RNA-RNA interaction
Main Institutes of management
"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

Rchange

Data type
RNA
Main Institutes of management
"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

Recount

Data type
DNA-sequence  Next Generation Sequencing Data
Main Institutes of management
"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

Rentropy

Data type
RNA
Main Institutes of management
"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

Rfold

Data type
RNA
Main Institutes of management
"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

Risk Learning

Data type
Chemical compound
Main Institutes of management
"Research Institute of Science for Safety and Sustainability (RISS), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
human
Commentary page →

SAMURAI

Data type
Gene expression
Main Institutes of management
"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

SCARNA Local Multiple

Data type
RNA alignment
Main Institutes of management
"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

SGCAL

Data type
Sugar chain
Main Institutes of management
"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

SMARTS 3D

Data type
Protein structure
Main Institutes of management
"Environmental Management Research Institute (EMRI), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
None
Commentary page →

SNP-system

Data type
DNA-sequence
Main Institutes of management
"Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

SOKOS/CAN

Data type
"RNA , RNA sequence"
Main Institutes of management
"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

SPALN

Data type
Comparative genomics
Main Institutes of management
"Graduate School of Informatics, Kyoto University"
Biological species in the main concern
All species
Commentary page →

Scarna

Data type
RNA
Main Institutes of management
"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

ScreenCap3

Data type
protein - amino-acid sequence
Main Institutes of management
"Biotechnology Research Institute for Drug Discovery, National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
metazoa
Commentary page →

SlideSort

Data type
DNA-sequence  Protein-sequence
Main Institutes of management
"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

SokanProject

Data type
Gene expression
Main Institutes of management
Kazusa DNA Research Institute (KDRI)
Biological species in the main concern
All species
Commentary page →

SpiceHIT

Data type
Metabolite repression
Main Institutes of management
Kazusa DNA Research Institute (KDRI)
Biological species in the main concern
All species
Commentary page →

Stem Kernels

Data type
RNA
Main Institutes of management
"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

TACT

Data type
DNA-sequence
Main Institutes of management
"Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
Humannon-human 41 species (http://h-invitational.jp/tact/species.html)
Commentary page →

THE MICROARRAY ANALYSIS SYSTEM - TREBAX -

Data type
Gene expression Microarray data
Main Institutes of management
NARA INSTITUTE of SCIENCE and TECHNOLOGY (NAIST)
Biological species in the main concern
All species
Commentary page →

TMBETA-NET

Data type
Protein-motif
Main Institutes of management
"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

Web page checker

Data type
Web contents
Main Institutes of management
"Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
None
Commentary page →

WoLF PSORT

Data type
"DNA-sequence , Nuclear genome encoded, Eukaryotic proteins"
Main Institutes of management
"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
Eukaryotes
Commentary page →

Workflow

Data type
workflow
Main Institutes of management
"Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

fastapl

Data type
DNA-sequence
Main Institutes of management
"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

miRRim

Data type
RNA  (miRNA)
Main Institutes of management
"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

myPresto

Data type
Protein-structure
Main Institutes of management
"Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

paraclu

Data type
DNA-sequence
Main Institutes of management
"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

seg-suite

Data type
"DNA-sequence , RNA-sequence"
Main Institutes of management
"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

siExplorer

Data type
RNA siRNA
Main Institutes of management
"Department of Chemistry and Biotechnology, School of Engineering, The University of Tokyo"
Biological species in the main concern
Human
Commentary page →

tantan

Data type
"DNA-sequence , RNA, Aminoacid"
Main Institutes of management
"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Biological species in the main concern
All species
Commentary page →

toxRank

Data type
-
Main Institutes of management
National Institute of Advanced Industrial Science and Technology (AIST)
Biological species in the main concern
Human|RAT
Commentary page →