| Name | LAMPLINK |
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| Aliases | detection of statistically significant epistatic interactions |
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| Description | The LAMPLINK can detect statistically significant epistatic interactions of two or more SNPs from GWAS data. This software can be used in the same way as the widely used GWAS analysis software PLINK, but LAMPLINK has the additional options for the detection of epistatic interactions with LAMP, which is a multiple testing procedure for combinatorial effects discovery. |
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| Type | Tool |
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| Main Institutes of management | Biotechnology Research Institute for Drug Discovery, National Institute of Advanced Industrial Science and Technology (AIST) |
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| Country of the Institute | Japan |
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| URL of the site | http://a-terada.github.io/lamplink/ |
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| Interface | CUI |
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| Input | SNP(MAP,PED format) |
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| Output | Statistics(Text(TSV)) |
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| Input example | We show an example of LAMPLINK using a sample GWAS dataset in example. |
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| Keyword | |
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| Amount of the all data for download（Mbyte） | Method to obtain the all data. | 105|https://github.com/a-terada/lamplink/archive/master.zip |
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| External resources (databases) in building the product. | |
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| Data type | DNA-sequnece |
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| Biological species in the main concern | All species |
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| Conditions of use | none |
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| Frequency of updates (in last two years) | unknown |
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| Last date of updates (date of confirmation) | 2017/05/19 (2019/06/03) |
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| Main IDs used in the products | None |
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| How to make a link to get access to each IDs. | None |
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| external databases to which this database/tool have links | None |
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| Published papers (PubMed IDs) | PMID:23882073 | PMID:17701901 |
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| Operational Status | Available |
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