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SOKOS/CAN

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NameSOKOS/CAN
AliasesSOKOS/CAN
DescriptionSOKOS/CAN (pronounced So-ko-scan) is an experimental implementation of stochastic or probabilistic context-free grammar (SCFG) for RNA sequence analysis with capability of computing the marginalizes count kernel which is a metric similarity between two RNA sequences.
TypeTool
Main Institutes of managementComputational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)
Country of the InstituteJapan
URL of the site-
InterfaceGUI
Input
Output
Input exampleRNA sequence
KeywordRNA
Amount of the all data for download(Mbyte) | Method to obtain the all data.0.35|From top page.
External resources (databases) in building the product.None
Data typeRNA , RNA sequence
Biological species in the main concernAll species
Conditions of useNone
Frequency of updates (in last two years)1
Last date of updates (date of confirmation)2007/05/22 (2019/07/08)
Main IDs used in the products-
How to make a link to get access to each IDs.None
external databases to which this database/tool have links-
Published papers (PubMed IDs)pmid:14571380 | pmid:12169556
Operational StatusClosed