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Tool

MXSCARNA

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NameMXSCARNA
AliasesMXSCARNA
DescriptionMXSCARNA (Multiplex Stem Candidate Aligner for RNAs) is a multiple alignment tool for RNA sequences using progressive alignment based on pairwise structural alignment algorithm of SCARNA.
TypeTool
Main Institutes of managementComputational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)
Country of the InstituteJapan
URL of the site-
InterfaceGUI
Input
Output
Input exampleInput RNA sequences, so MXSCARNA shows the multiple alignment and secondary structure.
KeywordRNA | common secondary structure | multiple alignment
Amount of the all data for download(Mbyte) | Method to obtain the all data.2.5|From top page.
External resources (databases) in building the product.None
Data typeRNA (RNA sequence)
Biological species in the main concernAll species
Conditions of useNone
Frequency of updates (in last two years)3
Last date of updates (date of confirmation)2007/11/24 (2019/07/08)
Main IDs used in the products-
How to make a link to get access to each IDs.-
external databases to which this database/tool have links-
Published papers (PubMed IDs)pmid:18215258
Operational StatusClosed