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Tool

PHMMTS

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NamePHMMTS
AliasesNone
DescriptionPHMMTS (Pair Hidden Markov Models on Tree Structures) aligns a sequence of unknown secondary structure to a sequence of known secondary structure (cited from the original site).
TypeTool
Main Institutes of managementKeio University | Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)
Country of the InstituteJapan
URL of the sitehttp://phmmts.dna.bio.keio.ac.jp/index.html
InterfaceGUI
Input
Output
Input examplestep1: Push "Example" button on the upper side of the search page (http://pstag.dna.bio.keio.ac.jp/search.html). step2. Push "Submit" button on the downside of the page.
Keywordhidden Markov models|unfolded RNA sequence|secondary structure
Amount of the all data for download(Mbyte) | Method to obtain the all data.0.19|Download phmmts.tar.gz from the page http://phmmts.dna.bio.keio.ac.jp/download.html
External resources (databases) in building the product.None
Data typeRNA
Biological species in the main concernAll species
Conditions of useNone
Frequency of updates (in last two years)0 time
Last date of updates (date of confirmation)2007/12/18 (2019/07/09)
Main IDs used in the productsN/A
How to make a link to get access to each IDs.None
external databases to which this database/tool have linksN/A
Published papers (PubMed IDs)pmid:16204111 | pmid:12855464
Operational StatusAvailable