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THE MICROARRAY ANALYSIS SYSTEM - TREBAX -

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NameTHE MICROARRAY ANALYSIS SYSTEM - TREBAX -
AliasesTREBAX
DescriptionThe Micro array analysis system TREBAX is a computersystem that makes possible the analysis and evaluation ofgenetic expression profiles, molecular biological function andeffective assignment of corresponding DNA nucleotides by mainlymanipulating data derived from spot type array methods (cDNAMicro array methods). Moreover, TREBAX can also be applied tothe analysis of any type of data other than cDNA micro array databy only modifying the respective input format.(Quoted from http://kanaya.naist.jp/Web/software/trebax/manual/Emanual.pdf)
TypeTool
Main Institutes of managementNARA INSTITUTE of SCIENCE and TECHNOLOGY (NAIST)
Country of the InstituteJapan
URL of the site-
InterfaceGUI
Input
Output
Input exampleAnalysis method of a single micro array:(1)Data pre-processingClicking Partial Av.Scaing button, TREBAX lowers the bias difference between the two cDNA micro array experiments a pre-processing of the array data.(2)Merging and unification with the master dataCorrespondence of the micro array spots ID' s with the respective gene names is obtained clicking on the InfMergevia.MasterFile button.Clicking the Plotter button a two dimensional plot for each gene name can be obtained which shows the relationship of the logarithmic correction term and the average of the logarithm of the intensities.(3)Analysis of gene function classificationWith the "Statistics for all ArrayData" button, one can obtaingenes having undergone changes in expression quantities within an interval pre set by the user.Furthermore, the gene distribution in each function category can also be output.
KeywordMicroarray analysis
Amount of the all data for download(Mbyte) | Method to obtain the all data.8.6|Download from http://kanaya.naist.jp/Web/software/trebax/trebax2.html
External resources (databases) in building the product.None
Data typeGene expression Microarray data
Biological species in the main concernAll species
Conditions of useNone
Frequency of updates (in last two years)No update for more than 2 years
Last date of updates (date of confirmation)2006/00/00 (2019/07/08)
Main IDs used in the productsN/A
How to make a link to get access to each IDs.None
external databases to which this database/tool have linksN/A
Published papers (PubMed IDs)pmid:17598888
Operational StatusClosed