Name ProSeg
Aliases a database of local structures of protein segments
Description

ProSeg is a database of local structures of protein segments. ProSeg contains thousands of clusters of protein segments that were classified according to their three-dimensional structural resemblance.

Type DB
Main Institutes of management "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Country of the Institute Japan
URL of the site -
Interface GUI
Input example

"You can search a cluster(s) by inputting appropriate parameters, which identify the backbone structure of a query segment. In ProSeg, there are three ways to identify the backbone structure of the segment: PDB ID, dihedral angles, and DSSP symbols."

Keyword
protein | local structures
Amount of the all data for download(Mbyte) | Method to obtain the all data. -|None
External resources (databases) in building the product. PDB
Data type Protein-motif
Biological species in the main concern
All species
Conditions of use Attribution&Noncommercial&No Derivative WorksPlease see http://riodb.ibase.aist.go.jp/proseg/overview.html#FAQ12
Frequency of updates (in last two years) 2
Last date of updates (date of confirmation) 2014/12/01 (2019/07/02)
Main IDs used in the products PDB ID | Chain ID
How to make a link to get access to each IDs. None
external databases to which this database/tool have links

None

Published papers (PubMed IDs)

pmid:18931918 | pmid:16731566

Operational Status

Closed