Name | ProSeg |
Aliases | a database of local structures of protein segments |
Description | ProSeg is a database of local structures of protein segments. ProSeg contains thousands of clusters of protein segments that were classified according to their three-dimensional structural resemblance. |
Type | DB |
Main Institutes of management | Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST) |
Country of the Institute | Japan |
URL of the site | - |
Interface | GUI |
Input example | You can search a cluster(s) by inputting appropriate parameters, which identify the backbone structure of a query segment. In ProSeg, there are three ways to identify the backbone structure of the segment: PDB ID, dihedral angles, and DSSP symbols. |
Keyword | protein | local structures |
Amount of the all data for download(Mbyte) | Method to obtain the all data. | -|None |
External resources (databases) in building the product. | PDB |
Data type | Protein-motif |
Biological species in the main concern | All species |
Conditions of use | Attribution&Noncommercial&No Derivative WorksPlease see http://riodb.ibase.aist.go.jp/proseg/overview.html#FAQ12 |
Frequency of updates (in last two years) | 2 |
Last date of updates (date of confirmation) | 2014/12/01 (2019/07/02) |
Main IDs used in the products | PDB ID | Chain ID |
How to make a link to get access to each IDs. | None |
external databases to which this database/tool have links | None |
Published papers (PubMed IDs) | pmid:18931918 | pmid:16731566 |
Operational Status | Closed |