INOH Pathway Database
| Name | INOH Pathway Database |
|---|---|
| Aliases | None |
| Description | INOH (Integrating Network Objects with Hierarchies) is a pathway database of model organisms including human, mouse, rat and others. In INOH, the term pathway refers to higher order functional knowledge such as relationships among multiple bio-molecules that constitute signal transduction pathways or biological events in general. As most part of this knowledge resides in scientific articles, the database focuses on curating and encoding textual knowledge into a machine-processable form.(the former URL:http://www.inoh.org/) |
| Type | DB |
| Main Institutes of management | Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST) | Graduate School of Frontier Sciences (GSFS), The University of Tokyo |
| Country of the Institute | Japan |
| URL of the site | http://dbarchive.biosciencedbc.jp/jp/inoh/desc.html |
| Interface | GUI | Client application |
| Input example | You can search at archive page. |
| Keyword | Signaling pathway | Metabolic pathway | Protein-Protein interaction |
| Amount of the all data for download（Mbyte） | Method to obtain the all data. | 34.5|Download from the page http://dbarchive.biosciencedbc.jp/jp/inoh/download.html |
| External resources (databases) in building the product. | SWISS-PROT | Gene Ontology (GO) |
| Data type | Protein-Proteome |
| Biological species in the main concern | Homo sapiens [Taxonomy_id: 9606, human] | Mus musculus [Taxonomy_id: 10090, house mouse] | Rattus norvegicus [Taxonomy_id: 10116, Norway rat] | ... |
| Conditions of use | CC BY-SA 2.1 JP |
| Frequency of updates (in last two years) | 8 |
| Last date of updates (date of confirmation) | 2011/03/29 (2019/07/03) |
| Main IDs used in the products | None |
| How to make a link to get access to each IDs. | None |
| external databases to which this database/tool have links | None |
| Published papers (PubMed IDs) | pmid:22120663 | pmid:11590099 | pmid:17094236 | pmid:18629146 | pmid:15089754 | Fukuda, K. 2008. INOH pathway database: Curation, Annotation, Integration. InterOntology08, 1(1), pp.47-50 (2008). | Fukuda, K., Yamamoto, S., Sakai, N., Nakanishi, Y., Nakamura, H., Takagi, T.: "Graphical Syntax and Query for Pathway Database", The 10th World Multi-Conference on Systemics, Cybernetics and Infrmatics, pp7-10 (2006). | Kushida, T., Yamamoto, S., Yamagata, Y., Asanuma, T., Hattori, E., Takagi, T. and Fukuda, K. 2005. Research on biological pathways peculiar to woody perennial Plants using a pathway database : P-INOH. Proceedings of International Workshop on Knowledge Discovery and Data Management in Biomedical Science. 2005.5, pp.56-67 | Fukuda, K. 2005. Higher Order Knowledge Proceeding : Pathway Database and Ontologies. Genomics & Informatics, vol.3, No.2, ISSN 1598-866X, 2005.6, pp.47-51 | Ken Ichiro Fukuda, Toshihisa Takagi. 2004. A Pathway Editor for Literature-based Knowledge Curation. APBC 2004, pp.339-344. | Ken Ichiro Fukuda, Yuki Yamagata, Toshihisa Takagi. 2004. Pathway Database: Higher Order Knowledge in Biology. Information Processing Society of Japan (IPSJ), Transactions on Databases, vol.45 No.SIG7(TOD 22) June 2004, pp.77-84 |
| Operational Status | Archived |