Database

DB-SPIRE

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NameDB-SPIRE
AliasesDatabase for Structure-based Protein Interaction Research
Description"This database includes motif sites of all protein structures in PDB, which are assigned from the motif position in the amino acid sequence. In this database, we use the two kinds of the functional motif databases (i.e. PROSITE and BLOCKS), and search the two kinds of the protein sequence in a PDB file, that is, a sequence described in SEQRES line and in ATOM line for the motif positions in the database. Consequently, the database includes four types of motif site data."
TypeDB
Main Institutes of management"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Country of the InstituteJapan
URL of the sitehttps://dbarchive.biosciencedbc.jp/jp/dbspire/desc.html
InterfaceGUI
Input exampleYou can search at archive page.
KeywordProtein
Amount of the all data for download(Mbyte) | Method to obtain the all data.0|None
External resources (databases) in building the product.PROSITE | BLOCKS | PDB | SCOP
Data typeProtein-motif
Biological species in the main concernAll species
Conditions of useCC BY-SA 2.1 JP
Frequency of updates (in last two years)0
Last date of updates (date of confirmation)2017/02/16 (2019/07/02)
Main IDs used in the productsPDP ID | PROSITE AC | BLOCKS AC
How to make a link to get access to each IDs.None
external databases to which this database/tool have linksNone
Published papers (PubMed IDs)None
Operational StatusArchived