Name DB-SPIRE
Aliases Database for Structure-based Protein Interaction Research
Description

"This database includes motif sites of all protein structures in PDB, which are assigned from the motif position in the amino acid sequence. In this database, we use the two kinds of the functional motif databases (i.e. PROSITE and BLOCKS), and search the two kinds of the protein sequence in a PDB file, that is, a sequence described in SEQRES line and in ATOM line for the motif positions in the database. Consequently, the database includes four types of motif site data."

Type DB
Main Institutes of management "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Country of the Institute Japan
URL of the site
Interface GUI
Input example

Under investigation

Keyword
Under investigation
Amount of the all data for download(Mbyte) | Method to obtain the all data. 0|None
External resources (databases) in building the product. PROSITE | BLOCKS | PDB | SCOP
Data type Protein-motif
Biological species in the main concern
All species
Conditions of use Under investigation
Frequency of updates (in last two years) 0
Last date of updates (date of confirmation) 2010/01/18 (2010/01/23)
Main IDs used in the products PDP ID | PROSITE AC | BLOCKS AC
How to make a link to get access to each IDs. Under investigation
external databases to which this database/tool have links

Under investigation

Published papers (PubMed IDs)

Under investigation