Name PPI view
Aliases Protein-Protein Interaction viewer
Description

"The PPI view displays H-InvDB human protein-protein interaction (PPI)information. PPI data were collected from five major public PPI databases (BIND, DIP, MINT, HPRD, IntAct) and integrated them as a non-redundant PPI dataset. As the result, we got 32,198 human PPIs comprised of 9,268 proteins. (at H-InvDB version 5.0) The PPI view displays proteins which interact with the usersCHR(39) query proteins (or gene products), and provides links to H-InvDB locus view and cDNA view, which guide you to the gene locations and the detailed gene functional annotations of these interacting proteins, respectively.PPI view: http://www.h-invitational.jp/hinv/ppi/ PPI view sample:http://h-invitational.jp/hinv/ppi/ppi_view.cgi?hip=HIP000084307"

Type DB
Main Institutes of management "Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)"
Country of the Institute Japan
URL of the site http://www.h-invitational.jp/hinv/ppi/index.html
Interface GUI
Input example

"We can search for our proteins of interest by inputting their keywords, H-InvDB IDs, or accession numbers on the search window of the top page (http://www.h-invitational.jp/hinv/ppi/index.html)."

Keyword
PPI | protein-protein interaction
Amount of the all data for download(Mbyte) | Method to obtain the all data. 0.0|None
External resources (databases) in building the product. BIND http://www.bind.ca/Action|DIP http://dip.doe-mbi.ucla.edu|MINT http://mint.bio.uniroma2.it/mint/Welcome.do|HPRD http://www.hprd.org|IntAct http://www.ebi.ac.uk/intact/index.jsp|GNP_Y2H http://genomenetwork.nig.ac.jp/public/sys/gnppub/Top.do
Data type Protein-Proteome
Biological species in the main concern
"Homo sapiens [Taxonomy_id: 9606, human]"
Conditions of use Freely available
Frequency of updates (in last two years) 1
Last date of updates (date of confirmation) 2010/09/10 (2010/09/15)
Main IDs used in the products H-Inv cluster ID (HIX) | H-Inv transcript ID (HIT) | H-Inv protein ID (HIP)
How to make a link to get access to each IDs. Under investigation
external databases to which this database/tool have links

Under investigation

Published papers (PubMed IDs)

Under investigation