Database

PPI view

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NamePPI view
AliasesProtein-Protein Interaction viewer
Description"The PPI view displays H-InvDB human protein-protein interaction (PPI)information. PPI data were collected from five major public PPI databases (BIND, DIP, MINT, HPRD, IntAct) and integrated them as a non-redundant PPI dataset. As the result, we got 32,198 human PPIs comprised of 9,268 proteins. (at H-InvDB version 5.0) The PPI view displays proteins which interact with the usersCHR(39) query proteins (or gene products), and provides links to H-InvDB locus view and cDNA view, which guide you to the gene locations and the detailed gene functional annotations of these interacting proteins, respectively.PPI view: http://www.h-invitational.jp/hinv/ppi/ PPI view sample:http://h-invitational.jp/hinv/ppi/ppi_view.cgi?hip=HIP000084307"
TypeDB
Main Institutes of management"Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)"
Country of the InstituteJapan
URL of the sitehttp://www.h-invitational.jp/hinv/ppi/index.html
InterfaceGUI
Input example"We can search for our proteins of interest by inputting their keywords, H-InvDB IDs, or accession numbers on the search window of the top page (http://www.h-invitational.jp/hinv/ppi/index.html)."
KeywordPPI | protein-protein interaction
Amount of the all data for download(Mbyte) | Method to obtain the all data.0.0|None
External resources (databases) in building the product. BIND http://www.bind.ca/Action|DIP http://dip.doe-mbi.ucla.edu|MINT http://mint.bio.uniroma2.it/mint/Welcome.do|HPRD http://www.hprd.org|IntAct http://www.ebi.ac.uk/intact/index.jsp|GNP_Y2H http://genomenetwork.nig.ac.jp/public/sys/gnppub/Top.do
Data typeProtein-Proteome
Biological species in the main concern"Homo sapiens [Taxonomy_id: 9606, human]"
Conditions of useFreely available
Frequency of updates (in last two years)1
Last date of updates (date of confirmation)2015/04/02 (2019/07/04)
Main IDs used in the productsH-Inv cluster ID (HIX) | H-Inv transcript ID (HIT) | H-Inv protein ID (HIP)
How to make a link to get access to each IDs.None
external databases to which this database/tool have linksNone
Published papers (PubMed IDs)None
Operational Statusavailable