| Name | CELLPEDIA |
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| Aliases | None |
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| Description | CELLPEDIA is a database for human cells, exhaustively collecting various types of information on cells.With a systematic classification of more than 2,000 cells based on their physical locations, each entry is organized with three types of basic information: cell morphological information with ontology, gene expression information, and related document information on cell differentiation, providing users all information requied for cell study at once (cited from original site). |
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| Type | DB |
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| Main Institutes of management | Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST) |
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| Country of the Institute | Japan |
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| URL of the site | http://shogoin.stemcellinformatics.org/ |
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| Interface | GUI |
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| Input example | Click the image "Endothelial cell" on the left side "Examples of Human Normal Cells" of the top page. |
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| Keyword | Ontology |
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| Amount of the all data for download（Mbyte） | Method to obtain the all data. | 0|None |
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| External resources (databases) in building the product. | NCBI | OBO |
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| Data type | Cell |
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| Biological species in the main concern | Homo sapiens [Taxonomy_id: 9606, human] |
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| Conditions of use | None |
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| Frequency of updates (in last two years) | 3times/year |
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| Last date of updates (date of confirmation) | 2019/06/01 (2019/07/03) |
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| Main IDs used in the products | Cell ID | Image ID | Celltype |
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| How to make a link to get access to each IDs. | http://cellpedia.cbrc.jp/cgi-bin/tissue.cgi?id=[Cell ID]&iid=[Image ID]&ctype=[Celltype (nomarlcell=1,stemcell=2,cellline=3)] |
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| external databases to which this database/tool have links | NCBI(http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL2987 , http://www.ncbi.nlm.nih.gov/pubmed) | OBO(http://www.obofoundry.org/cgi-bin/detail.cgi?id=cell) | SAMURAI(http://samurai.cbrc.jp//cgi-bin/index.cgi?page=1) | CellMontage(http://cellmontage.cbrc.jp/cgi-bin/) |
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| Published papers (PubMed IDs) | W. Fujibuchi, L. Kiseleva, T. Taniguchi, and P. Horton, Development of Cell Knowledge Base and Prediction of Cell Types and Characteristics by Gene Expression Profiles, 2005-BIO-2;33-37 SIG Meeting, Information Processing Society of Japan, 2005. |
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| Operational Status | available |
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