Name LfDB
Aliases Lectin Frontier DataBase
Description

"Lectin Frontier DataBase (LfDB) provides quantitative interaction data in terms of the affinity constants (Ka) of a series of lectins toward a panel of pyridylaminated (PA) glycans obtained by an automated frontal affinity chromatography with fluorescence detection (FAC-FD) system (Fig. 1). Since the data are accurate and reliable, providing the absolute values of sugar-protein interactions, LfDB would be a valuable resource in the studies of glycan-related biology.(cited from the original site)"

Type DB
Main Institutes of management "Research Center for Medical Glycoscience (RCMG), National Institute of Advanced Industrial Science and Technology (AIST)"
Country of the Institute Japan
URL of the site http://riodb.ibase.aist.go.jp/rcmg/glycodb/LectinSearch
Interface GUI
Input example

"1: Type keyword or choose categories among Lectin family, Monosaccharide Specificity, or 3D-fold. Click Show All to view the full lectin list.(cited from the original site)"

Keyword
An automated frontal affinity chromatography with fluorescence detection | Lectin | pyridylaminated glycans
Amount of the all data for download(Mbyte) | Method to obtain the all data. -|None
External resources (databases) in building the product. None
Data type "Sugar chain ,Lectin "
Biological species in the main concern
"Abrus precatorius | Agaricus bisporus | Agrocybe cylindracea | ... More
  • Abrus precatorius [Taxonomy_id: 3816, Indian licorice]
  • Agaricus bisporus [Taxonomy_id: 5341, button mushroom]
  • Agrocybe cylindracea [Taxonomy_id: 64608]
  • Aleuria aurantia [Taxonomy_id: 5188, orange peel mushroom]
  • Allium sativum [Taxonomy_id: 4682, garlic]
  • Amaranthus caudatus [Taxonomy_id: 3567, amaranth]
  • Amaranthus cruentus [Taxonomy_id: 117272]
  • Anguilla anguilla [Taxonomy_id: 7936, European eel]
  • Arachis hypogaea [Taxonomy_id: 3818, peanut]
  • Artocarpus heterophyllus [Taxonomy_id: 3489, jackfruit]
  • Arum maculatum [Taxonomy_id: 4458, cuckoopint]
  • Aspergillus kawachii IFO 4308 [Taxonomy_id: 1033177]
  • Aspergillus oryzae [Taxonomy_id: 5062]
  • Balanus roseus [Taxonomy_id: 509123]
  • Balanus rostratus [Taxonomy_id: 399131]
  • Bauhinia purpurea [Taxonomy_id: 3806, camel's foot tree]
  • Bitis arietans [Taxonomy_id: 8692, puff adder]
  • Boletop.htmlsis leucomelas [Taxonomy_id: 178527]
  • Boletus [Taxonomy_id: 5369]
  • Bondarzewia mesenterica [Taxonomy_id: 1095465]
  • Bos taurus [Taxonomy_id: 9913, cattle]
  • Bothrops jararaca [Taxonomy_id: 8724, jararaca]
  • Bufo arenarum [Taxonomy_id: 38577, Argentine toad]
  • Calystegia sepium [Taxonomy_id: 47519, hedge bindweed]
  • Canavalia brasiliensis [Taxonomy_id: 61861, Brazilian jackbean]
  • Canavalia ensiformis [Taxonomy_id: 3823, jack bean]
  • Capsicum annuum [Taxonomy_id: 4072]
  • Caragana arborescens [Taxonomy_id: 20484]
  • Castanea crenata [Taxonomy_id: 103480]
  • Ceratobasidium cornigerum [Taxonomy_id: 5252]
  • Chlorophyllum molybdites [Taxonomy_id: 34430]
  • Cicer arietinum [Taxonomy_id: 3827, chickpea]
  • Clostridium botulinum [Taxonomy_id: 1491]
  • Colchicum autumnale [Taxonomy_id: 45005]
  • Conger myriaster [Taxonomy_id: 7943, whitespotted conger]
  • Convolvulus arvensis [Taxonomy_id: 4123]
  • Cortinarius praestans [Taxonomy_id: 222043]
  • Cratylia mollis [Taxonomy_id: 252530]
  • Crotalus atrox [Taxonomy_id: 8730, western diamondback rattlesnake]
  • Cucumaria echinata [Taxonomy_id: 40245]
  • Cycas revoluta [Taxonomy_id: 3396]
  • Cytisus scoparius [Taxonomy_id: 3835]
  • Datura stramonium [Taxonomy_id: 4076, jimsonweed]
  • Dioclea grandiflora [Taxonomy_id: 3837, mucana]
  • Dioscorea batatas [Taxonomy_id: 55575]
  • Diospyros kaki [Taxonomy_id: 35925, kaki persimmon]
  • Dolichos lablab [Taxonomy_id: 35936]
  • Echis multisquamatus [Taxonomy_id: 93050]
  • Erythrina caffra [Taxonomy_id: 3842]
  • Erythrina corallodendron [Taxonomy_id: 3843]
  • Erythrina crista-galli [Taxonomy_id: 49817]
  • Erythrina lysistemon [Taxonomy_id: 347910]
  • Erythrina vespertilio [Taxonomy_id: 1234622]
  • Escherichia coli [Taxonomy_id: 562]
  • Euonymus europaeus [Taxonomy_id: 123417]
  • Galanthus nivalis [Taxonomy_id: 4670, common snowdrop]
  • Gallus gallus [Taxonomy_id: 9031, chicken]
  • Geodia cydonium [Taxonomy_id: 6047]
  • Giardia intestinalis [Taxonomy_id: 5741]
  • Glycine max [Taxonomy_id: 3847, soybean]
  • Griffonia simplicifolia [Taxonomy_id: 3850]
  • Haemophilus ducreyi [Taxonomy_id: 730]
  • Halichondria okadai [Taxonomy_id: 163232]
  • Helianthus tuberosus [Taxonomy_id: 4233]
  • Helicobasidium purpureum [Taxonomy_id: 5574, violet root rot]
  • Helix aspersa [Taxonomy_id: 6535, brown garden snail]
  • Helix pomatia [Taxonomy_id: 6536, Roman snail]
  • Hemitripterus americanus [Taxonomy_id: 8094, sea raven]
  • Hericium erinaceum [Taxonomy_id: 91752]
  • Hippeastrum hybrid cultivar [Taxonomy_id: 679627]
  • Homo sapiens [Taxonomy_id: 9606, human]
  • Human herpesvirus 4 [Taxonomy_id: 10376, Epstein-Barr virus]
  • Hydra vulgaris [Taxonomy_id: 6087]
  • Hypnea japonica [Taxonomy_id: 105606]
  • Hypsizygus marmoreus [Taxonomy_id: 39966]
  • Laetiporus sulphureus [Taxonomy_id: 5630, chicken-of-the-woods]
  • Lens culinaris [Taxonomy_id: 3864, lentil]
  • Limax flavus [Taxonomy_id: 36461]
  • Limulus polyphemus [Taxonomy_id: 6850, Atlantic horseshoe crab]
  • Lotus tetragonolobus [Taxonomy_id: 3868, winged pea]
  • Lumbricus terrestris [Taxonomy_id: 6398, common earthworm]
  • Lycoris traubii [Taxonomy_id: 82237]
  • Maackia amurensis [Taxonomy_id: 37501]
  • Maclura pomifera [Taxonomy_id: 3496, Osage orange]
  • Macrotyloma uniflorum [Taxonomy_id: 271171, Madras gram]
  • Momordica charantia [Taxonomy_id: 3673, balsam pear]
  • Morus nigra [Taxonomy_id: 85232]
  • Mus musculus [Taxonomy_id: 10090, house mouse]
  • Musa acuminata [Taxonomy_id: 4641, banana]
  • Narcissus pseudonarcissus [Taxonomy_id: 39639, daffodil]
  • Oncorhynchus keta [Taxonomy_id: 8018, chum salmon]
  • Oryza sativa [Taxonomy_id: 4530, rice]
  • Parkia platycephala [Taxonomy_id: 185447]
  • Phaseolus lunatus [Taxonomy_id: 3884, lima bean]
  • Phaseolus vulgaris [Taxonomy_id: 3885, kidney bean]
  • Phlebodium aureum [Taxonomy_id: 218620]
  • Phytolacca americana [Taxonomy_id: 3527, American pokeweed]
  • Pisum sativum [Taxonomy_id: 3888, pea]
  • Plecoglossus altivelis [Taxonomy_id: 61084, ayu]
  • Pleurotus ostreatus [Taxonomy_id: 5322, oyster mushroom]
  • Polyandrocarpa misakiensis [Taxonomy_id: 7723]
  • Polygonatum multiflorum [Taxonomy_id: 45371]
  • Psathyrella velutina [Taxonomy_id: 71681]
  • Pseudomonas aeruginosa [Taxonomy_id: 287]
  • Psophocarpus tetragonolobus [Taxonomy_id: 3891, winged bean]
  • Pteria penguin [Taxonomy_id: 113549]
  • Rana catesbeiana [Taxonomy_id: 8400, bullfrog]
  • Rattus norvegicus [Taxonomy_id: 10116, Norway rat]
  • Rattus rattus [Taxonomy_id: 10117, black rat]
  • Rhizoctonia solani [Taxonomy_id: 456999]
  • Ricinus communis [Taxonomy_id: 3988, castor bean]
  • Salvia viridis [Taxonomy_id: 49221]
  • Sambucus ebulus [Taxonomy_id: 28503]
  • Sambucus nigra [Taxonomy_id: 4202, European elder]
  • Sambucus sieboldiana [Taxonomy_id: 45463, Japanese elderberry]
  • Scilla campanulata [Taxonomy_id: 81759]
  • Sclerotinia [Taxonomy_id: 5179]
  • Silurus asotus [Taxonomy_id: 30991, Amur catfish]
  • Sinularia lochmodes [Taxonomy_id: 301888]
  • Solanum lycopersicum [Taxonomy_id: 4081]
  • Solanum tuberosum [Taxonomy_id: 4113, potato]
  • Sophora japonica [Taxonomy_id: 3897, Japanese pagoda tree]
  • Spirinchus lanceolatus [Taxonomy_id: 136040]
  • Streptomyces lividans [Taxonomy_id: 1916]
  • Streptomyces olivaceoviridis [Taxonomy_id: 1921]
  • Sus scrofa [Taxonomy_id: 9823, pig]
  • Tachypleus tridentatus [Taxonomy_id: 6853]
  • Trichosanthes kirilowii var. japonica [Taxonomy_id: 61011, Mongolian snake-gourd]
  • Trimeresurus flavoviridis [Taxonomy_id: 88087]
  • Triticum aestivum [Taxonomy_id: 4565, bread wheat]
  • Tulipa gesneriana [Taxonomy_id: 13306]
  • Ulex europaeus [Taxonomy_id: 3902, furze]
  • Urtica dioica [Taxonomy_id: 3501, great nettle]
  • Vicia faba [Taxonomy_id: 3906, fava bean]
  • Vicia villosa [Taxonomy_id: 3911, hairy vetch]
  • Vigna radiata [Taxonomy_id: 157791, mung bean]
  • Viscum album [Taxonomy_id: 3972, European mistletoe]
  • Wisteria floribunda [Taxonomy_id: 3922, Japanese wisteria]
  • Xenopus laevis [Taxonomy_id: 8355, African clawed frog]
"
Conditions of use Under investigation
Frequency of updates (in last two years) 1
Last date of updates (date of confirmation) 0000/00/00 (2009/02/04)
Main IDs used in the products None
How to make a link to get access to each IDs. None
external databases to which this database/tool have links

NCBI (http://www.ncbi.nlm.nih.gov) | Pfam (http://pfam.janelia.org) | PDB (http://www.rcsb.org/pdb/home/home.do)

Published papers (PubMed IDs)

pmid:805787 | pmid:12223272 | pmid:12968376 | pmid:15943812 | pmid:17947995