Database

TMBETA-GENOME

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NameTMBETA-GENOME
AliasesAnnotation of Beta-Barrel Membrane Proteins in Genomic Sequences.
Description"TMBETA-GENOME is a collection of amino acid sequences for all the completed genomes and the ""annotated beta-barrel membrane proteins (TMBs) using different discrimination algorithms. For each genome, the calculations have been performed with statistical methods and machine learning techniques and the results are accumulated in the database. Web interfaces to discriminate beta-barrel membrane proteins have been provided from this cite( """"TMBETA-DISC"""" and """"TMBETA-SVM"""")."""
TypeDB
Main Institutes of management"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Country of the InstituteJapan
URL of the sitehttp://dbarchive.biosciencedbc.jp/jp/tmbeta-genome/desc.html
InterfaceGUI
Input example"Select the organism. Select any of the methods or their combinations, and results are displayed with/without amino acid sequence information. (cited from original site)"
KeywordAnnotation of Beta-Barrel Membrane Proteins | Machine learning
Amount of the all data for download(Mbyte) | Method to obtain the all data.385|Downloadable ( Contact authors )
External resources (databases) in building the product.NCBI | SWISS-PROT | SOSUI | PDB
Data typeProtein-structure
Biological species in the main concernAll species
Conditions of useCC BY-SA 2.1 JP
Frequency of updates (in last two years)0
Last date of updates (date of confirmation)2015/12/11 (2019/07/04)
Main IDs used in the productsGenbank ID (gi)
How to make a link to get access to each IDs.None
external databases to which this database/tool have linksNCBI
Published papers (PubMed IDs)pmid:17088282 | pmid:15531602 | pmid:15833441 | pmid:15980447 | pmid:16204348
Operational StatusArchived