| Name | TMBETA-GENOME |
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| Aliases | Annotation of Beta-Barrel Membrane Proteins in Genomic Sequences. |
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| Description | TMBETA-GENOME is a collection of amino acid sequences for all the completed genomes and the "annotated beta-barrel membrane proteins (TMBs) using different discrimination algorithms. For each genome, the calculations have been performed with statistical methods and machine learning techniques and the results are accumulated in the database. Web interfaces to discriminate beta-barrel membrane proteins have been provided from this cite( ""TMBETA-DISC"" and ""TMBETA-SVM"")." |
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| Type | DB |
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| Main Institutes of management | Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST) |
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| Country of the Institute | Japan |
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| URL of the site | http://dbarchive.biosciencedbc.jp/jp/tmbeta-genome/desc.html |
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| Interface | GUI |
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| Input example | Select the organism. Select any of the methods or their combinations, and results are displayed with/without amino acid sequence information. (cited from original site) |
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| Keyword | Annotation of Beta-Barrel Membrane Proteins | Machine learning |
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| Amount of the all data for download（Mbyte） | Method to obtain the all data. | 385|Downloadable ( Contact authors ) |
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| External resources (databases) in building the product. | NCBI | SWISS-PROT | SOSUI | PDB |
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| Data type | Protein-structure |
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| Biological species in the main concern | All species |
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| Conditions of use | CC BY-SA 2.1 JP |
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| Frequency of updates (in last two years) | 0 |
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| Last date of updates (date of confirmation) | 2015/12/11 (2019/07/04) |
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| Main IDs used in the products | Genbank ID (gi) |
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| How to make a link to get access to each IDs. | None |
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| external databases to which this database/tool have links | NCBI |
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| Published papers (PubMed IDs) | pmid:17088282 | pmid:15531602 | pmid:15833441 | pmid:15980447 | pmid:16204348 |
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| Operational Status | Archived |
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