DescriptionThe EzCatDB database analyzes and classifies enzyme catalytic mechanisms on the basis of information from literature and data that are derived from entries in the Protein Data Bank (PDB). Each data set contains corresponding enzyme information, such as E.C. number, PDB entries with their annotated ligand information and active site residues, information on catalytic mechanisms, and links to other databases, such as Swiss-prot, CATH, KEGG, PDBsum, and PubMed.
Main Institutes of managementComputational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)
Country of the InstituteJapan
URL of the site
Input exampleInput the enzyme name in the "Enzyme Name in KEGG" box on the Search Page, then push "Search" button at the bottom of the screen.
KeywordEnzyme | Active site
Amount of the all data for download(Mbyte) | Method to obtain the all data.0|currently not available
External resources (databases) in building the product.SWISS-Prot | PDB | PubMed | KEGG | CATH | PDBsum | CSA | MACiE | journal
Data typeProtein-structure Enzyme
Biological species in the main concernAll species
Conditions of useAttribution&Noncommercial&Share AlikeUser account is not required
Frequency of updates (in last two years)10
Last date of updates (date of confirmation)2018/04/27 (2019/05/04)
Main IDs used in the productsDB code (酵素ID) | EC number | PDB ID | CATH code | KEGG Pathway ID | UniProt Accession Number | PubMed ID
How to make a link to get access to each IDs.[DB code]
external databases to which this database/tool have linksSWISS-Prot | PDB | PubMed | KEGG | CATH | PDBsum | PDBj | CSA | MACiE
Published papers (PubMed IDs)pmid:17039546 | pmid:15608227 | Nagano N., Nakagawa Z., Arita M., Tsukamoto K., Noguchi T. (2007) "EzCatDB" Nucleic Acids Research, Molecular Biology Database Collection entry number 613.
Operational Statusavailable