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EzCatDB
| Name | EzCatDB |
|---|---|
| Aliases | None |
| Description | The EzCatDB database analyzes and classifies enzyme catalytic mechanisms on the basis of information from literature and data that are derived from entries in the Protein Data Bank (PDB). Each data set contains corresponding enzyme information, such as E.C. number, PDB entries with their annotated ligand information and active site residues, information on catalytic mechanisms, and links to other databases, such as Swiss-prot, CATH, KEGG, PDBsum, and PubMed. |
| Type | DB |
| Main Institutes of management | Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST) |
| Country of the Institute | Japan |
| URL of the site | http://ezcatdb.cbrc.jp/EzCatDB/ |
| Interface | GUI |
| Input example | Input the enzyme name in the "Enzyme Name in KEGG" box on the Search Page, then push "Search" button at the bottom of the screen. |
| Keyword | Enzyme | Active site |
| Amount of the all data for download（Mbyte） | Method to obtain the all data. | 0|currently not available |
| External resources (databases) in building the product. | SWISS-Prot | PDB | PubMed | KEGG | CATH | PDBsum | CSA | MACiE | journal |
| Data type | Protein-structure Enzyme |
| Biological species in the main concern | All species |
| Conditions of use | Attribution&Noncommercial&Share AlikeUser account is not required |
| Frequency of updates (in last two years) | 10 |
| Last date of updates (date of confirmation) | 2018/04/27 (2019/05/04) |
| Main IDs used in the products | DB code (酵素ID) | EC number | PDB ID | CATH code | KEGG Pathway ID | UniProt Accession Number | PubMed ID |
| How to make a link to get access to each IDs. | http://mbs.cbrc.jp/EzCatDB/search/get.do?dbcode=[DB code] |
| external databases to which this database/tool have links | SWISS-Prot | PDB | PubMed | KEGG | CATH | PDBsum | PDBj | CSA | MACiE |
| Published papers (PubMed IDs) | pmid:17039546 | pmid:15608227 | Nagano N., Nakagawa Z., Arita M., Tsukamoto K., Noguchi T. (2007) "EzCatDB" Nucleic Acids Research, Molecular Biology Database Collection entry number 613. |
| Operational Status | available |
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