AliasesArabidopsis thaliana trans-factor and cis-element prediction database
DescriptionATTED-II provides predicted cis elements and co-regulated gene relationships in Arabidopsis thaliana to estimate gene functions. Data source of coexpressed genes is publicly available microarray data (58 experiments, 1388 slides) collected by AtGenExpress. Coexpression measure is mutual rank (MR) based on weighted Pearson's correlation coefficients. CoexSearch function is newly supplied as "CoexSearch" in Search menu at Mar 2010. NEDO project products are included in ATTEDⅡ.
Main Institutes of managementTohoku University | Human Genome Center (HGC), Institute of Medical Sciences, The University of Tokyo (IMSUT)
Country of the InstituteJapan
URL of the site
Input examplestep1: Input the keyword "MYB2" in the text box on the upper side of the top page, push "Search" button.step2: Click the hyperlink "list" on the right side of search result table, and you can see the coexpressed gene.
Keywordcoexpressed gene | cis elements | microarray | TSS
Amount of the all data for download(Mbyte) | Method to obtain the all data.50560|Donwload from the page
External resources (databases) in building the product.AtGenExpress
Data typeGene expression | microarray | Pathway
Biological species in the main concernArabidopsis thaliana [Taxonomy_id: 3702, thale cress]
Conditions of useAttribution & Creative Commons
Frequency of updates (in last two years)3 times / year
Last date of updates (date of confirmation)2018/01/29 (2019/07/03)
Main IDs used in the productsAGI code
How to make a link to get access to each IDs.[AGI code].html
external databases to which this database/tool have links EBI( | KEGG( | TAIR( | RAP-DB( | SALAD Database( | NCBI( | TIGER | MIPS( | SIGnAL( | Arabidopsis MPSS Plus( | Arabidopsis eFP Browser( | AthaMap( | KATANA( | TilViz(
Published papers (PubMed IDs)pmid:18953027 | pmid:17130150 | pmid:19767600 | pmid:19620096 | pmid:17932064
Operational Statusavailable