Name DAGViz
Aliases Directed Acyclic Graphs Viewer
Description

"DAGViz is a database to search and view ontology of 43 species, including Arabidopsis thaliana. You can search from GO term or gene product name. In the search screen, you can get detailed information through PubMed and links of gene products. It is possible to display DAG (the path from each GO term to the top term such as Biological Process). Each GO term can be displayed in a color chart representing each color. By arranging multiple color charts, you can easily compare GO terms observed in control experiments. "

Type DB
Main Institutes of management Kazusa DNA Research Institute (KDRI)
Country of the Institute Japan
URL of the site http://www.pgb.kazusa.or.jp/dagviz/
Interface GUI
Input example

"Enter ""response to stress"" in the text box, select ""Arabidopsis thaliana"" from the ""Select one or more databases"" field, and press the ""Search GO"" button."

Keyword
GO term | DAG
Amount of the all data for download(Mbyte) | Method to obtain the all data. 0|none
External resources (databases) in building the product. CGD | PAMGO | SGD | Sanger GeneDB | DictyBase | EBI | WormBase | ZFIN | FlyBase | MGI | RGD | TAIR | Gramene | SGN | CSHL | EcoCyc | PsedoCAP
Data type Annotation GO
Biological species in the main concern
"Agrobacterium tumefaciens str. C58 | Anaplasma phagocytophilum HZ | Arabidopsis thaliana | ... More
  • Agrobacterium tumefaciens str. C58 [Taxonomy_id: 176299]
  • Anaplasma phagocytophilum HZ [Taxonomy_id: 212042, agent of human granulocytic ehrlichiosis]
  • Arabidopsis thaliana [Taxonomy_id: 3702, thale cress]
  • Bacillus anthracis str. Ames [Taxonomy_id: 198094, anthrax bacterium]
  • Bos taurus [Taxonomy_id: 9913, cattle]
  • Caenorhabditis elegans [Taxonomy_id: 6239]
  • Campylobacter jejuni RM1221 [Taxonomy_id: 195099]
  • Candida albicans [Taxonomy_id: 5476]
  • Carboxydothermus hydrogenoformans Z-2901 [Taxonomy_id: 246194]
  • Clostridium perfringens ATCC 13124 [Taxonomy_id: 195103]
  • Colwellia psychrerythraea 34H [Taxonomy_id: 167879]
  • Coxiella burnetii RSA 493 [Taxonomy_id: 227377]
  • Danio rerio [Taxonomy_id: 7955, zebrafish]
  • Dehalococcoides ethenogenes 195 [Taxonomy_id: 243164]
  • Dictyostelium discoideum [Taxonomy_id: 44689]
  • Drosophila melanogaster [Taxonomy_id: 7227, fruit fly]
  • Ehrlichia chaffeensis Arkansas [Taxonomy_id: 205920]
  • Escherichia coli [Taxonomy_id: 562]
  • Gallus gallus [Taxonomy_id: 9031, chicken]
  • Geobacter sulfurreducens PCA [Taxonomy_id: 243231]
  • Homo sapiens [Taxonomy_id: 9606, human]
  • Hyphomonas neptunium ATCC 15444 [Taxonomy_id: 228405]
  • Leishmania major [Taxonomy_id: 5664]
  • Listeria monocytogenes serotype 4b str. F2365 [Taxonomy_id: 265669]
  • Magnaporthe grisea [Taxonomy_id: 148305]
  • Methylococcus capsulatus str. Bath [Taxonomy_id: 243233]
  • Mus musculus [Taxonomy_id: 10090, house mouse]
  • Neorickettsia sennetsu str. Miyayama [Taxonomy_id: 222891]
  • Oomycetes [Taxonomy_id: 4762]
  • Oryza sativa [Taxonomy_id: 4530, rice]
  • Plasmodium falciparum [Taxonomy_id: 5833, malaria parasite P. falciparum]
  • Pseudomonas aeruginosa PAO1 [Taxonomy_id: 208964]
  • Pseudomonas fluorescens Pf-5 [Taxonomy_id: 220664]
  • Pseudomonas syringae pv. phaseolicola 1448A [Taxonomy_id: 264730]
  • Pseudomonas syringae pv. tomato str. DC3000 [Taxonomy_id: 223283]
  • Rattus norvegicus [Taxonomy_id: 10116, Norway rat]
  • Saccharomyces cerevisiae [Taxonomy_id: 4932, baker's yeast]
  • Schizosaccharomyces pombe [Taxonomy_id: 4896, fission yeast]
  • Shewanella oneidensis MR-1 [Taxonomy_id: 211586]
  • Silicibacter pomeroyi DSS-3 [Taxonomy_id: 246200]
  • Solanaceae [Taxonomy_id: 4070, nightshade family]
  • Trypanosoma brucei [Taxonomy_id: 5691]
  • Vibrio cholerae [Taxonomy_id: 666]
"
Conditions of use None
Frequency of updates (in last two years) 0
Last date of updates (date of confirmation) 2005/10/28 (2019/07/05)
Main IDs used in the products GO ID
How to make a link to get access to each IDs. None
external databases to which this database/tool have links

AmiGO | Entrez | Uniprot | CGD | PAMGO | SGD | Sanger GeneDB | DictyBase | EBI | WormBase | ZFIN | FlyBase | MGI | RGD | TAIR | Gramene | SGN | CSHL | EcoCyc | PsedoCAP

Published papers (PubMed IDs)

None

Operational Status

available