Database

＜Previous Next＞

Recount DB

noimage
NameRecount DB
AliasesNone
DescriptionRecountDB is a database for corrected read counts and genome mapping on NCBI's Short Read Archive. The corrected count was done using RECOUNT and the mapping with LAST.
TypeDB
Main Institutes of managementComputational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)
Country of the InstituteJapan
URL of the site-
InterfaceGUI
Input exampleInput the keyword "SRX012261" in the text box on the center of the top page, push "Search" button.
KeywordSRA | RECOUNT | LAST | TSS-Seq | RNA-Seq | MESH
Amount of the all data for download（Mbyte） | Method to obtain the all data.52046|NA
External resources (databases) in building the product.NCBI | BIONET | ENSEMBL | UCSC | CANADIANGENOME | JGI | JCVI | SANGER | PLANTDB | TIGR | WASHINGTON UNIVERSITY GENOME CENTER | TOXODB
Data typeRNA
Biological species in the main concernAplysia californica | Acyrthosiphon pisum | Arabidopsis lyrata | Acyrthosiphon pisum [Taxonomy_id: 7029, pea aphid] | Aplysia californica [Taxonomy_id: 6500, California sea hare] | Arabidopsis lyrata [Taxonomy_id: 59689, lyrate rockcress] | Arabidopsis thaliana [Taxonomy_id: 3702, thale cress] | Bacillus anthracis [Taxonomy_id: 1392, anthrax] | Bombyx mori [Taxonomy_id: 7091, domestic silkworm] | Bos taurus [Taxonomy_id: 9913, cattle] | Brachypodium distachyon [Taxonomy_id: 15368] | Caenorhabditis elegans [Taxonomy_id: 6239] | Candida albicans [Taxonomy_id: 5476] | Cryptosporidium parvum [Taxonomy_id: 5807] | Dictyostelium discoideum [Taxonomy_id: 44689] | Dictyostelium purpureum [Taxonomy_id: 5786] | Drosophila melanogaster [Taxonomy_id: 7227, fruit fly] | Drosophila pseudoobscura [Taxonomy_id: 7237] | Drosophila simulans [Taxonomy_id: 7240] | Gallus gallus [Taxonomy_id: 9031, chicken] | Homo sapiens [Taxonomy_id: 9606, human] | Listeria monocytogenes [Taxonomy_id: 1639] | Macaca mulatta [Taxonomy_id: 9544, Rhesus monkey] | Medicago truncatula [Taxonomy_id: 3880, barrel medic] | Mus musculus [Taxonomy_id: 10090, house mouse] | Nematostella vectensis [Taxonomy_id: 45351, starlet sea anemone] | Oryza sativa [Taxonomy_id: 4530, rice] | Pan troglodytes [Taxonomy_id: 9598, chimpanzee] | Plasmodium berghei [Taxonomy_id: 5821] | Plasmodium falciparum [Taxonomy_id: 5833, malaria parasite P. falciparum] | Plasmodium yoelii [Taxonomy_id: 5861] | Prunus persica [Taxonomy_id: 3760, peach] | Saccharomyces cerevisiae [Taxonomy_id: 4932, baker's yeast] | Schmidtea mediterranea [Taxonomy_id: 79327, freshwater planarian] | Sus scrofa [Taxonomy_id: 9823, pig] | Toxoplasma gondii [Taxonomy_id: 5811] | Trichoplax adhaerens [Taxonomy_id: 10228] | Triticum aestivum [Taxonomy_id: 4565, bread wheat] | Zea mays [Taxonomy_id: 4577, maize]
Conditions of useUnknown
Frequency of updates (in last two years)0
Last date of updates (date of confirmation)2015/08/20 (2019/07/04)
Main IDs used in the productsNone
How to make a link to get access to each IDs.None
external databases to which this database/tool have linksNCBI SRA(http://www.ncbi.nlm.nih.gov/sra/)
Published papers (PubMed IDs)pmid:22139942
Operational StatusClosed
＜Previous Next＞