More informationXML output

Name TMBETA-GENOME
Aliases Annotation of Beta-Barrel Membrane Proteins in Genomic Sequences.
Description

TMBETA-GENOME is a collection of amino acid sequences for all the completed genomes and the "annotated beta-barrel membrane proteins (TMBs) using different discrimination algorithms. For each genome, the calculations have been performed with statistical methods and machine learning techniques and the results are accumulated in the database. Web interfaces to discriminate beta-barrel membrane proteins have been provided from this cite( ""TMBETA-DISC"" and ""TMBETA-SVM"")."

Type DB
Main Institutes of management "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Country of the Institute Japan
URL of the site http://dbarchive.biosciencedbc.jp/jp/tmbeta-genome/desc.html
Interface GUI
Input example

Keyword
Annotation of Beta-Barrel Membrane Proteins | Machine learning
Amount of the all data for download(Mbyte) | Method to obtain the all data. 385|Downloadable ( Contact authors )
External resources (databases) in building the product. NCBI | SWISS-PROT | SOSUI | PDB
Data type Protein-structure
Biological species in the main concern
All species
Conditions of use Freely available
Frequency of updates (in last two years) 0
Last date of updates (date of confirmation) 2007/00/00 (2009/01/22)
Main IDs used in the products Genbank ID (gi)
How to make a link to get access to each IDs. None
external databases to which this database/tool have links

NCBI

Published papers (PubMed IDs)

pmid:17088282 | pmid:15531602 | pmid:15833441 | pmid:15980447 | pmid:16204348