INOH Pathway Database

NameINOH Pathway Database
DescriptionINOH (Integrating Network Objects with Hierarchies) is a pathway database of model organisms including human, mouse, rat and others. In INOH, the term pathway refers to higher order functional knowledge such as relationships among multiple bio-molecules that constitute signal transduction pathways or biological events in general. As most part of this knowledge resides in scientific articles, the database focuses on curating and encoding textual knowledge into a machine-processable form.(the former URL:
Main Institutes of managementComputational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST) | Graduate School of Frontier Sciences (GSFS), The University of Tokyo
Country of the InstituteJapan
URL of the site
InterfaceGUI | Client application
Input exampleYou can search at archive page.
KeywordSignaling pathway | Metabolic pathway | Protein-Protein interaction
Amount of the all data for download(Mbyte) | Method to obtain the all data.34.5|Download from the page
External resources (databases) in building the product.SWISS-PROT | Gene Ontology (GO)
Data typeProtein-Proteome
Biological species in the main concernHomo sapiens [Taxonomy_id: 9606, human] | Mus musculus [Taxonomy_id: 10090, house mouse] | Rattus norvegicus [Taxonomy_id: 10116, Norway rat] | ...
Conditions of useCC BY-SA 2.1 JP
Frequency of updates (in last two years)8
Last date of updates (date of confirmation)2011/03/29 (2019/07/03)
Main IDs used in the productsNone
How to make a link to get access to each IDs.None
external databases to which this database/tool have linksNone
Published papers (PubMed IDs)pmid:22120663 | pmid:11590099 | pmid:17094236 | pmid:18629146 | pmid:15089754 | Fukuda, K. 2008. INOH pathway database: Curation, Annotation, Integration. InterOntology08, 1(1), pp.47-50 (2008). | Fukuda, K., Yamamoto, S., Sakai, N., Nakanishi, Y., Nakamura, H., Takagi, T.: "Graphical Syntax and Query for Pathway Database", The 10th World Multi-Conference on Systemics, Cybernetics and Infrmatics, pp7-10 (2006). | Kushida, T., Yamamoto, S., Yamagata, Y., Asanuma, T., Hattori, E., Takagi, T. and Fukuda, K. 2005. Research on biological pathways peculiar to woody perennial Plants using a pathway database : P-INOH. Proceedings of International Workshop on Knowledge Discovery and Data Management in Biomedical Science. 2005.5, pp.56-67 | Fukuda, K. 2005. Higher Order Knowledge Proceeding : Pathway Database and Ontologies. Genomics & Informatics, vol.3, No.2, ISSN 1598-866X, 2005.6, pp.47-51 | Ken Ichiro Fukuda, Toshihisa Takagi. 2004. A Pathway Editor for Literature-based Knowledge Curation. APBC 2004, pp.339-344. | Ken Ichiro Fukuda, Yuki Yamagata, Toshihisa Takagi. 2004. Pathway Database: Higher Order Knowledge in Biology. Information Processing Society of Japan (IPSJ), Transactions on Databases, vol.45 No.SIG7(TOD 22) June 2004, pp.77-84
Operational StatusArchived