| Name | KATANA |
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| Aliases | Kazusa Arabidopsis thaliana Annotation Abstract |
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| Description | Genomic information of Arabidopsis thaliana can be obtained from various public databases. Given that naming conventions often vary between databases and that the same genes can be annotated differently, we developed a web-based tool, KATANA (Kazusa Arabidopsis thaliana Annotation Abstract; http://www.kazusa.or.jp/katana/), to guide users searching for Arabidopsis genomic information to the relevant public databases from a single site. The tool contains information and annotations of genes and proteins, gene families, gene ontology (GO) terms, metabolic pathways and gene expression data from the Massively Parallel Signature Sequencing (MPSS) experiments. Given that entries in the tool are hyper-linked to those of the databases, detailed information can be accessed at the original sites. Advanced searches for metabolic pathways and GO terms can also be performed.(cited from the original paper) |
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| Type | DB |
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| Main Institutes of management | Kazusa DNA Research Institute (KDRI) |
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| Country of the Institute | Japan |
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| URL of the site | http://www.kazusa.or.jp/katana/index.html |
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| Interface | GUI |
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| Input example | You can search by the keyword in search window at the site. |
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| Keyword | Arabidopsis thaliana | database| annotation | gene ontology | metabolic pathway |
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| Amount of the all data for download（Mbyte） | Method to obtain the all data. | 0|None |
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| External resources (databases) in building the product. | TAIR | TIGR | KEGG | AtTFDB | MIPS | AraCyc |
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| Data type | Gene expression , Metabolic pathway, Gene ontoloby |
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| Biological species in the main concern | Arabidopsis thaliana [Taxonomy_id: 3702, thale cress] |
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| Conditions of use | None |
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| Frequency of updates (in last two years) | No update for more than 2 years |
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| Last date of updates (date of confirmation) | 2007/02/19 (2019/07/03) |
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| Main IDs used in the products | N/A |
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| How to make a link to get access to each IDs. | None |
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| external databases to which this database/tool have links | TAIR | TIGR | MIPS| KEGG | AraCyc | agris | MPSS | GO |
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| Published papers (PubMed IDs) | KATANA: A web-based guide to public databases for Arabidopsis genomic information Kentaro Yano, Tomoko Dansako, Nozomu Sakurai, Hideyuki Suzuki, Daisuke Shibata, Plant Biotechnology 22(3), 225-229 (2005). |
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| Operational Status | available |
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