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ASTRA

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SummaryASTRA is a database that classifies alternative splicing patterns and alternative transcriptional initiation patterns of Human, Mouse, D.melanogaster, C.elegans, A.thaliana, O. sativa. (cited from the original site)
Data typeDNA-sequence
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CellMontage

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SummaryCellMontage is a system for searching gene expression databases for cells or tissues similar to the query gene expression profile. The similarity of two profiles is computed by comparing the order of genes ranked by expression.
Data typeGene expression | Cell | Tissue
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Database of genomes and transcriptional regulations for filamentous fungi

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SummaryThe filamentous fungus, Aspergillus oryzae, plays an important role in the Japanese sake and fermentation industry, and many industrial enzymes are produced by this organism. We hope this database will provide you useful information for your research and industrial applications.
Data typeDNA-sequence
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Evola

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SummaryEvola (Evolutionary annotation database) is a database providing ortholog information of H-InvDB human genes. Evola contains orthologs among human and 14 vertebrates (chimpanzee, macaque, mouse, rat, dog, horse, cow, opossum, chicken, zebrafish, medaka, Tetraodon, and fugu). Evolutionary bioligical information such as protein multiple alignments, phylogenetic trees, transcript variants, and the degree of natural selection (dN/dS) are implemented.
Data typeComparative genomics
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FLJ Human cDNA Database

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SummaryFLJ human cDNA database was constructed as human cDNA sequence analysis database focused on mRNA varieties caused by variations of transcription start site (TSS) and splicing.Human gene number was estimated to be 20-25 thousand. However number of human mRNA varieties was predicted to be about 100 thousand. The varieties are thought to be caused by variations of TSS and splicing. In our previous human cDNA project, about 30 thousand of FLJ human full-length sequenced cDNAs were deposited to DDBJ/GenBank/EMBL, and we obtained about 1.4 million of 5'-end sequences (5'-EST) of FLJ full-length cDNAs from about 100 kinds of cDNA libraries consist of human tissues and cells constructed by oligo-capping method.(cited from original site)
Data typeDNA-sequence full length cDNA
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G-compass

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SummaryG-compass was designed as a tool for the study of comparative genomics. It provides the data of evolutionarily conserved genomic regions and orthologous genes between human and 12 vertebrates (chimpanzee, rhesus monkey, mouse, rat, dog, cow, horse, opossum, chicken, zebrafish, medaka and Tetraodon). Information of ultraconserved elements (UCE) and copy number variable regions (CNV) are provided. Sliding window analysis and dot plot analysis are also implemented.
Data typeComparative genomics
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GenoBase

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SummaryScope of database (GenoBase) is to understand comprehensively the living-cell system of Escherichia coli K-12 (W3110). Until now, GenoBase is the public repository for Sequence Information, Proteome, Transcriptome, Bioinformatics, and Knowledge based on literature concerning E.coli. The results of the NEDO project was contained.
Data typeAnnotation
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GlycoExplorer

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SummaryGlycoExplorer is integrated search system for glyco science. This system provides co-occurrence words and reference information.
Data typeSugar chain
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GlycoPOD

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SummaryGlycoPOD is glyco science protocol online database. This database provides main text (introduction, protocol and references), Q&A and rating.
Data typeglyco science protocol
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H-ANGEL

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SummaryH-ANGEL is a resource which provides information on human gene expression. H-ANGEL displays expression patterns of transcriptional products generated by the H-Invitational project in practical tissue categories based on tissue-specific expression data from several experimental platforms. H-ANGEL also displays information for the expression of different genes at their corresponding physical positions in the human genome. This information is linked to the corresponding transcript or locus annotation data stored in H-InvDB.
Data typeGene expression
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