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All Database catalog ( 78/78 )

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Name（Link to site）| Link to commentary page Data type Biological species in the main concern Main Institutes of management
ARCHAIC | Commentary page DNA-sequence , genome Archaeoglobus fulgidus [Taxonomy_id: 2234] | Pyrococcus horikoshii OT3 [Taxonomy_id: 70601] | Thermoplasma volcanium GSS1 [Taxonomy_id: 273116] Neuroscience Research Institute (NRI), National Institute of Advanced Industrial Science and Technology (AIST)
ARMLiPDB | Commentary page Gene expression Mus musculus [Taxonomy_id: 10090, house mouse] National Institute of Advanced Industrial Science and Technology (AIST), Age Dimension Research Center
ASTRA | Commentary page DNA-sequence Arabidopsis thaliana | Caenorhabditis elegans | Drosophila melanogaster | ... Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)
ATTED II | Commentary page Gene expression , microarray, Pathway Arabidopsis thaliana [Taxonomy_id: 3702, thale cress] TOHOKU UNIVERSITY and Human Genome Center, Institute of Medical Sciences, TOKYO UNIVERSITY
Acacia EST database | Commentary page DNA-sequence EST Acacia mangium [Taxonomy_id: 224085, eudicots] Kyoto University.
Arch GeNet | Commentary page Gene expression Thermoplasma volcanium GSS1 [Taxonomy_id: 273116] Neuroscience Research Institute (NRI), National Institute of Advanced Industrial Science and Technology (AIST)
Brain Atlas Database of Japanese Monkey for WWW. | Commentary page Morphology , MRI image Macaca fuscata [Taxonomy_id: 9542, Japanese macaque] | Macaca mulatta [Taxonomy_id: 9544, Rhesus monkey] | Homo sapiens [Taxonomy_id: 9606, human] Neuroscience Research Institute (NRI), National Institute of Advanced Industrial Science and Technology (AIST)
CELLPEDIA | Commentary page Cell Homo sapiens [Taxonomy_id: 9606, human] AIST | CBRC
CGH Data Base | Commentary page Disease-cancer Homo sapiens [Taxonomy_id: 9606, human] Medical Research Institute Tokyo Medical and Dental University
CellMontage | Commentary page Gene expression , Cell, Tissue Homo sapiens [Taxonomy_id: 9606, human] Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)
Chemical Risk Information Platform | Commentary page Chemical compound chemical substance Under investigation Data Analysis Division Chemical Management Center National Institute of Technology and Evaluation (NITE)
Chemical　hazard assessment document | Commentary page Chemical compound Human , Algae, crustaceans, fish Chemicals Evaluation and Research Institute, Japan
CoP | Commentary page Gene expression Arabidopsis thaliana | Glycine max | Hordeum vulgare | ... Kazusa DNA Research Institute
ConfC | Commentary page Protein-structure All species Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)
DAGViz | Commentary page Annotation GO Agrobacterium tumefaciens str. C58 | Anaplasma phagocytophilum HZ | Arabidopsis thaliana | ... Kazusa DNA Research Institute.
DB-SPIRE | Commentary page Protein-motif All species Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)
DIAM | Commentary page Journal , Biosafety infomation All bacteria Japan Bioindustry Association.
DNA ProbeLocator | Commentary page Gene expression probe Homo sapiens [Taxonomy_id: 9606, human] Biomedicinal Information Research Center (BIRC), National Institute of Advanced Industrial Science and Technology (AIST)
DOGAN | Commentary page DNA-sequence , Proteome Acetobacter pasteurianus IFO 3283-32 | Acidiphilium multivorum AIU301 | Aeropyrum pernix K1 | ... National Institute of Technology and Evaluation.
Database for genetic engineering of microalgae | Commentary page DNA-regration-region Anabaena sp. | Nostoc sp. | Synechococcus sp. | ... National Institute of Advanced Industrial Science and Technology (AIST)
Database of Genomic Variants | Commentary page DNA-polymol Homo sapiens [Taxonomy_id: 9606, human] The Centre for Applied Genomics
Database of genomes and transcriptional regulations for filamentous fungi | Commentary page DNA-sequence Aspergillus oryzae [Taxonomy_id: 5062, ascomycetes] | Aspergillus nidulans [Taxonomy_id: 162425, ascomycetes] National Institute of Advanced Industrial Science and Technology (AIST)
DoBISCUIT | Commentary page Annotation , secondary metabolite Pseudomonas fluorescens | Sorangium cellulosum | Stigmatella aurantiaca | ... National Institute of Technology and Evaluation.
Escherichia coli Multi-omics Database | Commentary page Gene expression , Protein, Metabolities Escherichia coli [Taxonomy_id: 562, enterobacteria] Keio University.
Evola | Commentary page Comparative genomics Homo sapiens | Pan troglodytes | Pongo abelii | ... Biomedicinal Information Research Center (BIRC), National Institute of Advanced Industrial Science and Technology (AIST)
EzCatDB | Commentary page Protein-structure Enzyme All species Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)
FLJ Human cDNA Database | Commentary page DNA-sequence full length cDNA Homo sapiens [Taxonomy_id: 9606, human] Biomedicinal Information Research Center (BIRC), National Institute of Advanced Industrial Science and Technology (AIST)
FuLoJa | Commentary page DNA-motif Lotus japonicus [Taxonomy_id: 34305, eudicots] Kazusa DNA Research Institute.
G-compass | Commentary page Comparative genomics Homo sapiens | Bos taurus | Canis lupus familiaris | ... Biomedicinal Information Research Center (BIRC), National Institute of Advanced Industrial Science and Technology (AIST)
GENIUS II | Commentary page Ptotein-sequence amino acid sequence All species Computational Biology Research Center (CBRC),National Institute of Advanced Industrial Science and Technology (AIST)
GGDB | Commentary page DNA-sequence Substrates, Expression Homo sapiens [Taxonomy_id: 9606, human] Research Center for Medical Glycoscience (RCMG), National Institute of Advanced Industrial Science and Technology (AIST)
GMDB | Commentary page Sugar chain All species Research Center for Medical Glycoscience (RCMG), National Institute of Advanced Industrial Science and Technology (AIST)
GenoBase | Commentary page Annotation Escherichia coli str. K-12 substr. MG1655 [Taxonomy_id: 511145] | Escherichia coli str. K-12 substr. W3110 [Taxonomy_id: 316407] NARA INSTITUTE of SCIENCE and TECHNOLOGY (NAIST) | PURDUE UNIVERSITY
GlycoProtDB | Commentary page Protein-motif Caenorhabditis elegans [Taxonomy_id: 6239, nematodes] | Mus musculus [Taxonomy_id: 10090, house mouse] Research Center for Medical Glycoscience (RCMG), National Institute of Advanced Industrial Science and Technology
H-ANGEL | Commentary page Gene expression Homo sapiens [Taxonomy_id: 9606, human] Japan Biological Informatics Consortium (JBiC) | Biomedicinal Information Research Center (BIRC), National Institute of Advanced Industrial Science and Technology (AIST)
H-DBAS | Commentary page Human and mouse full-length cDNA | Human and mouse mRNA | Rat, chimpanzee, macaque and dog RNA Homo sapiens | Mus musculus | Rattus norvegicus | ... Biomedicinal Information Research Center (BIRC), National Institute of Advanced Industrial Science and Technology (AIST)
H-Exp | Commentary page Gene expression Homo sapiens [Taxonomy_id: 9606, human] Biomedicinal Information Research Center (BIRC), National Institute of Advanced Industrial Science and Technology (AIST)
H-InvDB | Commentary page RNA human full-length cDNA, mRNA Homo sapiens [Taxonomy_id: 9606, human] Biomedicinal Information Research Center (BIRC), National Institute of Advanced Industrial Science and Technology (AIST)
HGPD | Commentary page DNA-sequence Homo sapiens [Taxonomy_id: 9606, human] Biomedicinal Information Research Center (BIRC), National Institute of Advanced Industrial Science and Technology (AIST)
Human-Gene diversity Of Life-style related Diseases (H-GOLD) | Commentary page , microsatellites, SNP Homo sapiens [Taxonomy_id: 9606, human] Biomedicinal Information Research Center (BIRC), National Institute of Advanced Industrial Science and Technology (AIST)
INOH Pathway Database | Commentary page Protein-Proteome Homo sapiens [Taxonomy_id: 9606, human] | Mus musculus [Taxonomy_id: 10090, house mouse] | Rattus norvegicus [Taxonomy_id: 10116, Norway rat] | ... Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST) | Graduate School of Frontier Sciences The University of Tokyo (GSFS)
Integrated Cancer Genome Database | Commentary page Under investigation Homo sapiens [Taxonomy_id: 9606, human] The Genome Center of Japanese Foundation for Cancer Research
JSNP DATABASE | Commentary page single nucleotide polymorphism (SNP) allele frequency Homo sapiens [Taxonomy_id: 9606, human] The University of Tokyo and Japan Science and Technology Agency(JST)
KATANA | Commentary page Gene expression , Metabolic pathway, Gene ontoloby Arabidopsis thaliana [Taxonomy_id: 3702, thale cress] Kazusa DNA Research Institute.
KNApSAcK | Commentary page Metabolite repression mass spectra Plant NARA INSTITUTE of SCIENCE and TECHNOLOGY
KNApSAck Family | Commentary page Metabolite repression plant, bacteria, human NARA INSTITUTE of SCIENCE and TECHNOLOGY.
KomicMarket | Commentary page Metabolite repression , mass spectra Solanum lycopersicum | Arabidopsis thaliana | Brassica oleracea var. capitata | ... Kazusa DNA Reserach Institute.
LEGENDA | Commentary page Journal , Gene, Disease, Substrate All species Biomedicinal Information Research Center (BIRC), National Institute of Advanced Industrial Science and Technology (AIST)
LfDB | Commentary page Sugar chain ,Lectin Abrus precatorius | Agaricus bisporus | Agrocybe cylindracea | ... Research Center for Medical Glycoscience (RCMG), National Institute of Advanced Industrial Science and Technology (AIST)
MCG CNV Database | Commentary page DNA-polymol array Homo sapiens [Taxonomy_id: 9606, human] Tokyo Medical and Dental University
MEDALS | Commentary page metadata All species Japan Biological Informatics Consortium (JBiC)|Biomedicinal Information Research Center (BIRC), National Institute of Advanced Industrial Science and Technology (AIST)
MFSearcher | Commentary page Metabolite repression All species Kazusa DNA Research Institute.
MS-MS Fragment Viewer | Commentary page Chemical compound , mass spectra All species Kazusa DNA Research Institute.
MassBank | Commentary page mass spectral data Plant Keio University.
MassBase | Commentary page Metabolite repression Acacia mangium | Arabidopsis thaliana | Cosmos bipinnatus | ... Kazusa DNA research institute.
Microorganism database system | Commentary page Journal old species name (if any), philogenetic position, type strain, isolation origin, chemical components as chemical taxonomic index, substrate availability, energy gain type, accession number of 16S rDNA to DDBJ/EMBL/GenBank and so on. Bacterium Institute for Biological Resources and Functions (BRF), National Institute of Advanced Industrial Science and Technology (AIST)
NBRC culture catalogue search | Commentary page DNA-sequence Bacteria National Institute of Technology and Evaluation.
OpenPML | Commentary page DNA-polymol All species Japan Biological Informatics consortium | DNA Data Bank of Japan
PCDq | Commentary page Interaction Homo sapiens [Taxonomy_id: 9606, human] Biomedicinal Information Research Center (BIRC), National Institute of Advanced Industrial Science and Technology (AIST)
PDB-REPRDB | Commentary page Protein-structure protein chain All species Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)
PMPi-Blast | Commentary page DNA-sequence , EST-sequence Arabidopsis thaliana [Taxonomy_id: 3702, thale cress] | Lotus japonicus [Taxonomy_id: 34305] Kazusa DNA Research Institute.
PPI view | Commentary page Protein-Proteome Homo sapiens [Taxonomy_id: 9606, human] Biomedicinal Information Research Center (BIRC), National Institute of Advanced Industrial Science and Technology (AIST)
PoSSuM | Commentary page Protein-structure All species AIST|CBRC
ProSeg | Commentary page Protein-motif All species Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)
RAvariome | Commentary page Genetic/Genomic variants Homo sapiens [Taxonomy_id: 9606, human] Biomedicinal Information Research Center (BIRC), National Institute of Advanced Industrial Science and Technology (AIST)
Rat Brain Sections | Commentary page Morphology image Rattus norvegicus [Taxonomy_id: 10116, Norway rat] National Institute of Advanced Industrial Science and Technology (AIST)
Reference database for gene Expression Analysis | Commentary page Disease-cancer gene expression Homo sapiens [Taxonomy_id: 9606, human] Epigenome & Signaling Cluster University of Tokyo (ESCUT)
RnR | Commentary page Metabolite repression Arabidopsis thaliana [Taxonomy_id: 3702, thale cress] Kazusa DNA Research Institute.
SEVENS | Commentary page Ptotein-sequence amino acid sequence Homo sapiens | Pan troglodytes | Gorilla gorilla | ... Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)
TMBETA-DISC | Commentary page Protein-AminoAcid All species AIST | CBRC
TMBETA-GENOME | Commentary page Protein-structure All species Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)
TMFunction | Commentary page Protein-structure ,　functional residues Homo sapiens | Escherichia coli | xenopus | ... AIST | CBRC
The Functional RNA Sequence Database | Commentary page RNA All species Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)
The Theileria orientalis Genome Annotation Database | Commentary page Comparative genomics Theileria orientalis, Theileria parva, Theileria annulata Research Center for Zoonosis Control, Hokkaido University
The database of full-length cDNA and EST sequences of Lotus | Commentary page DNA-sequence Lotus japonicus [Taxonomy_id: 34305, eudicots] Kazusa DNA Research Institute.
TraP | Commentary page Metabolite repression Aeropyrum pernix | Archaeoglobus fulgidus | Pyrococcus abyssi | ... National Institute of Advanced Industrial Science and Technology (AIST)
UCSC GenomeBrowser for Functional RNA | Commentary page Comparative genomics Homo sapiens | Rattus norvegicus | Drosophila melanogaster | ... Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)
VarySysDB | Commentary page Under investigation Homo sapiens [Taxonomy_id: 9606, human] Biomedicinal Information Research Center (BIRC), National Institute of Advanced Industrial Science and Technology (AIST)
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