| Name | PoSSuM |
|---|
| Aliases | Pocket Similarity Search using Multiple-Sketches |
|---|
| Description | PoSSuM enables rapid exploration of similar binding sites among structures with different global folds as well as similar ones. Moreover, PoSSuM is useful for predicting the binding ligand for unbound structures. Basically, the users can search similar binding pockets using two search modes(cited from original site). |
|---|
| Type | DB |
|---|
| Main Institutes of management | Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST) |
|---|
| Country of the Institute | Japan |
|---|
| URL of the site | http://possum.cbrc.jp/PoSSuM/ | https://dbarchive.biosciencedbc.jp/jp/possum/desc.html |
|---|
| Interface | GUI |
|---|
| Input example | step1: access SearchK(http://possum.cbrc.jp/PoSSuM/search_k.html) menu.step2: Input the id "1DJQ" in the "PDB ID" textbox.step3: Input the id "APD" in the "HET code of ligand" textbox, push the "Submit" button. |
|---|
| Keyword | Protein | Substrate binding site |
|---|
| Amount of the all data for download（Mbyte） | Method to obtain the all data. | 0|None |
|---|
| External resources (databases) in building the product. | PDB|CATH |
|---|
| Data type | Protein-structure |
|---|
| Biological species in the main concern | All species |
|---|
| Conditions of use | None |
|---|
| Frequency of updates (in last two years) | 6 |
|---|
| Last date of updates (date of confirmation) | 2014/10/15 (2019/07/03) |
|---|
| Main IDs used in the products | N/A |
|---|
| How to make a link to get access to each IDs. | None |
|---|
| external databases to which this database/tool have links | PDB(http://www.pdb.org/)|CATH(http://www.cathdb.info/)|School of Biological and Chemical Sciences(http://www.sbcs.qmul.ac.uk/) |
|---|
| Published papers (PubMed IDs) | pmid:22113700 | pmid:22135290 | pmid:25404129 |
|---|
| Operational Status | available |
|---|
