More information
| Name | CELLPEDIA |
|---|---|
| Aliases | None |
| Description | CELLPEDIA is a database for human cells, exhaustively collecting various types of information on cells. With a systematic classification of more than 2,000 cells based on their physical locations, each entry is organized with three types of basic information: cell morphological information with ontology, gene expression information, and related document information on cell differentiation, providing users all information requied for cell study at once (cited from original site). |
| Type | DB |
| Main Institutes of management | AIST | CBRC |
| Country of the Institute | Japan |
| URL of the site | http://riodb.ibase.aist.go.jp/CELLPEDIA/cgi-bin/index.cgi?page=1 |
| Interface | GUI |
| Input example | Click the image "Endothelial cell" on the left side "Examples of Human Normal Cells" of the top page. |
| Amount of the all data for download（Mbyte） | Method to obtain the all data. | 0 | None |
| External resources (databases) in building the product. | NCBI | OBO |
| Data type | Cell |
| Biological species in the main concern | Human |
| Conditions of use | Under investigation |
| Frequency of updates (in last two years) | 3times/year |
| Last date of updates (date of confirmation) | 2010/03/04 (2010/03/3) |
| Main IDs used in the products | Cell ID | Image ID | Celltype |
| How to make a link to get access to each IDs. | http://riodb.ibase.aist.go.jp/CELLPEDIA/cgi-bin/tissue.cgi?id=[CellID]&iid=[ImageID]&ctype=[Celltype(nomarlcell=1,stemcell=2,cellline=3)] |
| external databases to which this database/tool have links | NCBI( http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL2987 , http://www.ncbi.nlm.nih.gov/pubmed ) | OBO( http://www.obofoundry.org/cgi-bin/detail.cgi?id=cell ) | SAMURAI( http://samurai.cbrc.jp//cgi-bin/index.cgi?page=1 ) | CellMontage( http://cellmontage.cbrc.jp/cgi-bin/ ) |
| Published papers (PubMed IDs) | W. Fujibuchi, L. Kiseleva, T. Taniguchi, and P. Horton, Development of Cell Knowledge Base and Prediction of Cell Types and Characteristics by Gene Expression Profiles, 2005-BIO-2;33-37 SIG Meeting, Information Processing Society of Japan, 2005. |